Unix tools:
Unix tutorial (local),VIM (book_pdf), xmgrace, gnuplot (tutorial_pdf), latex (CTAN, List_of_symbols_pdf), re, Atom editor ,
bash scripting (local_pdf_1, local_pdf_2), perl (CPAN).
Linux distributions:
Debian, Kubuntu, KNOPPIX, Nimblex, tomsrbt
Programming:
Fortran Compilers (g95, gfortran, intel_ifort), courses at Liverpool and tutorial (local_pdf)
Electronic Structure codes:
espresso, pwscf, wannier90, want, PAOFLOW , AFLOWpi , list on atomistic.software .